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E1 Ninjutsu Gakuen Entrance
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E2 The Kunoichi Class is Terrible
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E3 A Strange Ninja
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E4 Gakuenchou's Thoughts
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E5 Shinbei Disappeared
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E6 The Puzzle of the Two-faced Ninja
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E7 Golden Week
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E8 Shinbei is Suspect
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E9 The Swordsman - Hanabusa Makinosuke
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E10 Who is the Greatest?
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E11 Sneak Into the Kunoichi Classroom
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E12 Shinbei is Missing
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E13 The Shinobi Genius
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E14 Taiji the Thief
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E15 The Big Contest
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E16 Magnificent Friendship
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E17 Misshi Shinkurou
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E18 Run to Nameko Castle
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E19 The Pirate who Couldn't Swim
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E20 Lovesick
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E21 Yamada-sensei is the Target
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E22 Combination Class
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E23 Kinoko Mountain Juudan Practice
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E24 Once Again, the Swordsman Hanabusa Makinosuke
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E25 My Father's Killer
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E26 There'll Be No Summer Vacation
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E27 Gakuenchou's Wallscroll
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E28 Message from God
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E29 The Lord of Maitake Castle
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E30 Steal the Rations!
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E31 Daisan-kyoueimaru's Ship
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E32 Hieta Happousai
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E33 Shinbei's Apology
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E34 Many Kinds of Autumn
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E35 Troubled People
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E36 The Famous Sword Gokurakumaru
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E37 The Missing Ricebowl
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E38 Shindemohashirou's Mansion
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E39 The Excellent Little Brother
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E40 The Phantom Mushroom
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E41 Summer Vacation Senility
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E42 The Transfer Student of Rumors
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E43 Tensaimaru and Shuusaimaru
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E44 An Autumn Wind Pierces the Body
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E45 Wind, Woods, Fire and Mountain
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E46 Junko and Junichi
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E47 The Pot of Treasure
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E48 A Greedy Mistake
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E49 Nintama Helpful Sword?
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E50 Gakuencho's Soup
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E51 The Shy Ninja
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E52 The Nervous Ninja
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E53 Save Ichinen-hagumi!
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E54 Kirimaru is Bothered
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E55 The Stolen Sign
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E56 The Secret of the Sign
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E57 The Princess is?
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E58 The Part-time Mountain Bandit
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E59 Kurokoge Panzou
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E60 The Piece of Tatami
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E61 Mom Comes to the School
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E62 Dad's Success
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E63 The Poison Under the Floor
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E64 Kiri-chan's Mistake
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E65 The Shuriken Contest
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E66 The Burning Menu
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E67 It's Fake Money!
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E68 Who is the Criminal?
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E69 The Stolen Gun
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E70 Showdown! Dokutake Castle
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E71 Nintama Make-up Exam
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E72 Goldfish Yaai!
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E73 The Cafeteria is Taken!
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E74 It's a Hotspring!
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E75 Hemuhemu is Missing!
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E76 Give Back Hemuhemu!
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E77 To Sausage Temple!
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E78 Beat the Second Year Students!
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E79 The Ridicoulously Strong Gang of Theives
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E80 Find the Weak Point!
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E81 I'm Full!
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E82 Be Cold-Hearted!
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E83 Obachan Catches a Cold!
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E84 Kirimaru's Big Profit
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E85 I Want to be a Teacher
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E86 The Beginning of a Beautiful Day
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E87 Kirichan's Part-time Jobs
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E88 Kirichan's Greed
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E89 Strong Shinbei
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E90 The Failure Ninja
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E91 And the greatest is?